Tutorials
Background on the pathogens I work on, and hands-on walkthroughs of the methods. Code is in R.
DENV
Dengue
Four serotypes, many genotypes and a great deal of genomic data.
CHIKV
Chikungunya
An alphavirus behind explosive outbreaks and long-lasting joint pain.
Anginosus group
S. intermedius
A commensal streptococcus with a habit of forming abscesses.
Methods
Methods
Renewal equations, phylodynamics and reproducible pipelines.
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